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Short Course on Analysis of Association and Sequencing Data in Human Genetics, Shanghai, June 17-21, 2013
breeding  2013-04-09 03:48:05, 조회 : 2,979, 추천 : 634

Short Course on Analysis of Association and Sequencing Data in Human Genetics, Shanghai, June 17-21, 2013

A short course will be held at Fudan University in Shanghai, China, 17-21 June 2013 (Hosts: Prof. Jurg Ott, IPCAS Beijing, and Prof. David Saffen, Department of Cellular and Genetic Medicine, Fudan University). Course participants are expected to bring their own laptops to carry out hands- on exercises. The course program is similar to the one at our previous Beijing course but additional material like sequencing and SNP imputation will be covered (see below). Instructors will be Marcella Devoto (University of Pennsylvania, Philadelphia), Suzanne Leal (Baylor College of Medicine & Rockefeller University), Yin Yao (National Institutes of Health, Washington DC), and Jurg Ott (Institute of Psychology CAS & Rockefeller University).

Detailed information and application instructions may be obtained from Lily Chen (Fudan U, Shanghai) or Chao Chen (IPCAS, Beijing). The course fee of CNY
5000 RMB (US$ 900) will cover lectures and handouts but not transportation or accommodation.

Monday 17 June 2013
- Morning
Welcome (J. Ott)
01 Lecture: Introduction and overview to association studies (J. Ott)
02 Exercise: Data quality control and data cleaning (Y. Yao)
- Afternoon
03 Lecture: Association analysis 占?Genetic models, logistic regression,
   covariates (J. Ott)
04 Exercise: Association analysis including logistic regression and
   covariates (M. Devoto)

Tuesday 18 June 2013
- Morning
05 Lecture: Controlling for multiple testing, permutation and false
   discovery rate (FDR) (J. Ott)
06 Exercise: UCSC Genome Browser, HapMap and Haploview (M. Devoto)
- Afternoon
07 Exercise: Controlling for population stratification using MDS (M. Devoto)
08 Exercise: More genome-wide association analysis (Y. Yao)

Wednesday 19 June 2013
- Morning
09 Lecture: Multi-locus analysis, GxG interactions, homozygosity mapping (J. Ott)
10 Exercise: SumStat and ScanStat programs, testing for gene interactions (J. Ott)
11 Lecture: Pedigree-based analysis to detect genetic risk factors (Y. Yao)
- Afternoon
Free for sight-seeing on your own initiative

Thursday 20 June 2013
- Morning
12 Lecture: Quality control for rare variant data obtained from next generation
   sequencing (S. Leal)
13 Lecture: Complex trait rare variant association analysis (S. Leal)
14 Exercise: Analysis of rare variants (S. Leal)
- Afternoon
15 Lecture: Principles of genetic imputation (M. Devoto)
16 Exercise: Imputation and analysis of imputed data (M. Devoto)

Friday 21 June 2013
- Morning
17 Exercise: Power analysis for common variants using Quanto and PGA (M. Devoto)
18 Exercise: Power analysis for rare variant data (S. Leal)
-- Remaining work not finished on previous days
- Afternoon
Discussion, analyzing participants' data, wrap-up

For more details & registration, please see:
http://www.jurgott.org/course2013-06-17/courseFudanU.html


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